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Team:Colombia Uniandes/ChimiJournal
From 2013.igem.org
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Harja et al., “Bust n’ Grab” Protocol for Yeast Genomic DNA Extraction | Harja et al., “Bust n’ Grab” Protocol for Yeast Genomic DNA Extraction | ||
<ol> | <ol> | ||
| - | <li>5 mL of overnight culture of S. cerevisiae (in BHI medium) were centrifuged at 8500 rpm for 5 min. Discard de supernatant.</li> | + | <li>5 mL of overnight culture of ''S. cerevisiae'' (in BHI medium) were centrifuged at 8500 rpm for 5 min. Discard de supernatant.</li> |
<li>500 µL of Harja lysis buffer were added to each tube.</li> | <li>500 µL of Harja lysis buffer were added to each tube.</li> | ||
<li>Place 2 min at -20 °C, 1 min in water bath at 90 °C and repeat.</li> | <li>Place 2 min at -20 °C, 1 min in water bath at 90 °C and repeat.</li> | ||
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===='''June 26, 2013'''==== | ===='''June 26, 2013'''==== | ||
<ul> | <ul> | ||
| - | <li> | + | <li>We made competent yeast following the procedure mentioned before.</li> |
| - | <li>We also made our first PCRs! We used primers 6 & 1 (A) and 34 & 9 (B) to extract VP16 from the Nal1 plasmid | + | <li>We also made our first PCRs! We used primers 6 & 1 (A) and 34 & 9 (B) to extract VP16 and GCR from the Nal1 plasmid.</li> |
<li>Confirmation gel (2013-06-26 19 hr 16 min.jpg & 2013-06-26 19hr 15 min.jpg) with wells: | <li>Confirmation gel (2013-06-26 19 hr 16 min.jpg & 2013-06-26 19hr 15 min.jpg) with wells: | ||
<ol> | <ol> | ||
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B = GCR | B = GCR | ||
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| + | [[File:Construct.png|200px|thumb]] | ||
Revision as of 20:25, 25 September 2013
Contents
Hands at work!
Here you will find the overall progression of our work at the laboratory designing Chimi.
13th June 2013
The first thing we did was to extract the plasmids from the iGEM plaque.
- From the 2013 kit, Plate 1, Well 19 – o
- From the 2013 kit, Plate 1, Well 2 – i
- From the 2013 kit, Plate 3, Well 17 – c
The iGEM parts were taken in order to perform an electroporation. For this, we use:
- 20 µ of miliQ water (ultra pure). Find the plate and stick the tip with water into the well, perforating the aluminum.
- Resuspend the well’s content by gentle pipetting.
- When the water has a dark red color, transfer it to a PCR eppendorf and put on ice.
15th June 2013
We stung the transformant colonies.
18th June 2013
We performed miniprep procedures with the GenElute HP Plasmid Miniprep kit.
This are the overall steps:
- Harvest cells.
- Resuspend cells.
- Cell lysis.
- Neutralization.
Spin method:
- Prepare column.
- Load cleared lysate.
- Wash column with wash solution 1.
- Was column with wash solution 2.
- Centrifuge.
- Elute DNA.
We did a confirmation Gel 100 V x 30 min. -> It showed 1 bond in the first two wells corresponding to Nal1 and Nal2. We succesfully extracted the Nal plasmids!
June 21, 2013
Harja et al., “Bust n’ Grab” Protocol for Yeast Genomic DNA Extraction
- 5 mL of overnight culture of S. cerevisiae (in BHI medium) were centrifuged at 8500 rpm for 5 min. Discard de supernatant.
- 500 µL of Harja lysis buffer were added to each tube.
- Place 2 min at -20 °C, 1 min in water bath at 90 °C and repeat.
- Vortex 30 s.
- Add 500 µL of chloroform, vortex 2 min and centrifuge 3 min at 8500 rpm.
- Transfer the upper aqueous phase to a tube with 800 µL of chilled 100% ethanol and mix by inversion.
- Incubate for 5 min at room temperature or at 30 °C.
- Centrifuge for 5 min, 8500 rpm, and discard supernatant.
- Wash the pellet with 500 µL of ethanol (100%) by vortex. Repeat step 9.
- Dry pellets at room temperature or at 60 °C.
- Resuspend in 40 µL miliQ water.
June 26, 2013
- We made competent yeast following the procedure mentioned before.
- We also made our first PCRs! We used primers 6 & 1 (A) and 34 & 9 (B) to extract VP16 and GCR from the Nal1 plasmid.
- Confirmation gel (2013-06-26 19 hr 16 min.jpg & 2013-06-26 19hr 15 min.jpg) with wells:
- Ladder
- PCR A
- PCR B
- Miniprep for Nal. 1
A = VP16
B = GCR
Contents |
Hands at work!
Here you will find the overall progression of our work at the laboratory designing Chimi.
13th June 2013
The first thing we did was to extract the plasmids from the iGEM plaque.
- From the 2013 kit, Plate 1, Well 19 – o
- From the 2013 kit, Plate 1, Well 2 – i
- From the 2013 kit, Plate 3, Well 17 – c
The iGEM parts were taken in order to perform an electroporation. For this, we use:
- 20 µ of miliQ water (ultra pure). Find the plate and stick the tip with water into the well, perforating the aluminum.
- Resuspend the well’s content by gentle pipetting.
- When the water has a dark red color, transfer it to a PCR eppendorf and put on ice.
15th June 2013
We stung the transformant colonies.
18th June 2013
We performed miniprep procedures with the GenElute HP Plasmid Miniprep kit.
This are the overall steps:
- Harvest cells.
- Resuspend cells.
- Cell lysis.
- Neutralization.
- Prepare column.
- Load cleared lysate.
- Wash column with wash solution 1.
- Was column with wash solution 2.
- Centrifuge.
- Elute DNA.
Spin method:
We did a confirmation Gel 100 V x 30 min. -> It showed 1 bond in the first two wells corresponding to Nal1 and Nal2. We succesfully extracted the Nal plasmids!
June 21, 2013
Harja et al., “Bust n’ Grab” Protocol for Yeast Genomic DNA Extraction
- 5 mL of overnight culture of S. cerevisiae (in BHI medium) were centrifuged at 8500 rpm for 5 min. Discard de supernatant.
- 500 µL of Harja lysis buffer were added to each tube.
- Place 2 min at -20 °C, 1 min in water bath at 90 °C and repeat.
- Vortex 30 s.
- Add 500 µL of chloroform, vortex 2 min and centrifuge 3 min at 8500 rpm.
- Transfer the upper aqueous phase to a tube with 800 µL of chilled 100% ethanol and mix by inversion.
- Incubate for 5 min at room temperature or at 30 °C.
- Centrifuge for 5 min, 8500 rpm, and discard supernatant.
- Wash the pellet with 500 µL of ethanol (100%) by vortex. Repeat step 9.
- Dry pellets at room temperature or at 60 °C.
- Resuspend in 40 µL miliQ water.
June 26, 2013
- We made competent yeast following the procedure mentioned before.
- We also made our first PCRs! We used primers 6 & 1 (A) and 34 & 9 (B) to extract VP16 and GCR from the Nal1 plasmid.
- Confirmation gel (2013-06-26 19 hr 16 min.jpg & 2013-06-26 19hr 15 min.jpg) with wells:
- Ladder
- PCR A
- PCR B
- Miniprep for Nal. 1
A = VP16
B = GCR
