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'''Phaectory: Producing high-value proteins in ''Phaeodactylum tricornutum'' ''' | '''Phaectory: Producing high-value proteins in ''Phaeodactylum tricornutum'' ''' | ||
{{:Team:Marburg/Template:ContentStart}} | {{:Team:Marburg/Template:ContentStart}} | ||
| + | {{:Team:Marburg/Template:Cycle.js}} | ||
The diatom ''Phaeodactylum tricornutum'' is a widely spread organism in marine and limnic waters. Together with about 6000 other species, diatoms belong to the phylum of heterokonts. As a group of great ecological relevance diatoms are responsible for up to 20% of the global CO<sub>2</sub> fixation and generate about 40 % of the marine biomass of primary producers (Falkowski ''et al.'', 1998, Field ''et al.'', 1998). | The diatom ''Phaeodactylum tricornutum'' is a widely spread organism in marine and limnic waters. Together with about 6000 other species, diatoms belong to the phylum of heterokonts. As a group of great ecological relevance diatoms are responsible for up to 20% of the global CO<sub>2</sub> fixation and generate about 40 % of the marine biomass of primary producers (Falkowski ''et al.'', 1998, Field ''et al.'', 1998). | ||
Revision as of 11:37, 21 September 2013
Phaectory: Producing high-value proteins in Phaeodactylum tricornutum
/*!* jQuery Cycle Plugin (with Transition Definitions) * Examples and documentation at: http://jquery.malsup.com/cycle/ * Copyright (c) 2007-2013 M. Alsup * Version: 3.0.3 (11-JUL-2013) * Dual licensed under the MIT and GPL licenses. * http://jquery.malsup.com/license.html * Requires: jQuery v1.7.1 or later */
- (function($, undefined) {
"use strict";
var ver = '3.0.3';
function debug(s) { if ($.fn.cycle.debug) log(s); } function log() { /*global console */ if (window.console && console.log) console.log('[cycle] ' + Array.prototype.join.call(arguments,' ')); } $.expr[':'].paused = function(el) { return el.cyclePause; };
// the options arg can be...
// a number - indicates an immediate transition should occur to the given slide index
// a string - 'pause', 'resume', 'toggle', 'next', 'prev', 'stop', 'destroy' or the name of a transition effect (ie, 'fade', 'zoom', etc)
// an object - properties to control the slideshow
//
// the arg2 arg can be...
// the name of an fx (only used in conjunction with a numeric value for 'options')
// the value true (only used in first arg == 'resume') and indicates
// that the resume should occur immediately (not wait for next timeout)
$.fn.cycle = function(options, arg2) { var o = { s: this.selector, c: this.context };
// in 1.3+ we can fix mistakes with the ready state if (this.length === 0 && options != 'stop') { if (!$.isReady && o.s) { log('DOM not ready, queuing slideshow'); $(function() { $(o.s,o.c).cycle(options,arg2); }); return this; } // is your DOM ready? http://docs.jquery.com/Tutorials:Introducing_$(document).ready() log('terminating; zero elements found by selector' + ($.isReady ? : ' (DOM not ready)')); return this; }
// iterate the matched nodeset return this.each(function() { var opts = handleArguments(this, options, arg2); if (opts === false) return;
opts.updateActivePagerLink = opts.updateActivePagerLink || $.fn.cycle.updateActivePagerLink;
// stop existing slideshow for this container (if there is one) if (this.cycleTimeout) clearTimeout(this.cycleTimeout); this.cycleTimeout = this.cyclePause = 0; this.cycleStop = 0; // issue #108
var $cont = $(this); var $slides = opts.slideExpr ? $(opts.slideExpr, this) : $cont.children(); var els = $slides.get();
if (els.length < 2) { log('terminating; too few slides: ' + els.length); return; }
var opts2 = buildOptions($cont, $slides, els, opts, o); if (opts2 === false) return;
var startTime = opts2.continuous ? 10 : getTimeout(els[opts2.currSlide], els[opts2.nextSlide], opts2, !opts2.backwards);
// if it's an auto slideshow, kick it off if (startTime) { startTime += (opts2.delay || 0); if (startTime < 10) startTime = 10; debug('first timeout: ' + startTime); this.cycleTimeout = setTimeout(function(){go(els,opts2,0,!opts.backwards);}, startTime); } }); };
function triggerPause(cont, byHover, onPager) { var opts = $(cont).data('cycle.opts'); if (!opts) return; var paused = !!cont.cyclePause; if (paused && opts.paused) opts.paused(cont, opts, byHover, onPager); else if (!paused && opts.resumed) opts.resumed(cont, opts, byHover, onPager); }
// process the args that were passed to the plugin fn function handleArguments(cont, options, arg2) { if (cont.cycleStop === undefined) cont.cycleStop = 0; if (options === undefined || options === null) options = {}; if (options.constructor == String) { switch(options) { case 'destroy': case 'stop': var opts = $(cont).data('cycle.opts'); if (!opts) return false; cont.cycleStop++; // callbacks look for change if (cont.cycleTimeout) clearTimeout(cont.cycleTimeout); cont.cycleTimeout = 0; if (opts.elements) $(opts.elements).stop(); $(cont).removeData('cycle.opts'); if (options == 'destroy') destroy(cont, opts); return false; case 'toggle': cont.cyclePause = (cont.cyclePause === 1) ? 0 : 1; checkInstantResume(cont.cyclePause, arg2, cont); triggerPause(cont); return false; case 'pause': cont.cyclePause = 1; triggerPause(cont); return false; case 'resume': cont.cyclePause = 0; checkInstantResume(false, arg2, cont); triggerPause(cont); return false; case 'prev': case 'next': opts = $(cont).data('cycle.opts'); if (!opts) { log('options not found, "prev/next" ignored'); return false; } if (typeof arg2 == 'string') opts.oneTimeFx = arg2; $.fn.cycle[options](opts); return false; default: options = { fx: options }; } return options; } else if (options.constructor == Number) { // go to the requested slide var num = options; options = $(cont).data('cycle.opts'); if (!options) { log('options not found, can not advance slide'); return false; } if (num < 0 || num >= options.elements.length) { log('invalid slide index: ' + num); return false; } options.nextSlide = num; if (cont.cycleTimeout) { clearTimeout(cont.cycleTimeout); cont.cycleTimeout = 0; } if (typeof arg2 == 'string') options.oneTimeFx = arg2; go(options.elements, options, 1, num >= options.currSlide); return false; } return options;
function checkInstantResume(isPaused, arg2, cont) { if (!isPaused && arg2 === true) { // resume now! var options = $(cont).data('cycle.opts'); if (!options) { log('options not found, can not resume'); return false; } if (cont.cycleTimeout) { clearTimeout(cont.cycleTimeout); cont.cycleTimeout = 0; } go(options.elements, options, 1, !options.backwards); } } }
function removeFilter(el, opts) { if (!$.support.opacity && opts.cleartype && el.style.filter) { try { el.style.removeAttribute('filter'); } catch(smother) {} // handle old opera versions } }
// unbind event handlers function destroy(cont, opts) { if (opts.next) $(opts.next).unbind(opts.prevNextEvent); if (opts.prev) $(opts.prev).unbind(opts.prevNextEvent);
if (opts.pager || opts.pagerAnchorBuilder) $.each(opts.pagerAnchors || [], function() { this.unbind().remove(); }); opts.pagerAnchors = null; $(cont).unbind('mouseenter.cycle mouseleave.cycle'); if (opts.destroy) // callback opts.destroy(opts); }
// one-time initialization function buildOptions($cont, $slides, els, options, o) { var startingSlideSpecified; // support metadata plugin (v1.0 and v2.0) var opts = $.extend({}, $.fn.cycle.defaults, options || {}, $.metadata ? $cont.metadata() : $.meta ? $cont.data() : {}); var meta = $.isFunction($cont.data) ? $cont.data(opts.metaAttr) : null; if (meta) opts = $.extend(opts, meta); if (opts.autostop) opts.countdown = opts.autostopCount || els.length;
var cont = $cont[0]; $cont.data('cycle.opts', opts); opts.$cont = $cont; opts.stopCount = cont.cycleStop; opts.elements = els; opts.before = opts.before ? [opts.before] : []; opts.after = opts.after ? [opts.after] : [];
// push some after callbacks if (!$.support.opacity && opts.cleartype) opts.after.push(function() { removeFilter(this, opts); }); if (opts.continuous) opts.after.push(function() { go(els,opts,0,!opts.backwards); });
saveOriginalOpts(opts);
// clearType corrections if (!$.support.opacity && opts.cleartype && !opts.cleartypeNoBg) clearTypeFix($slides);
// container requires non-static position so that slides can be position within if ($cont.css('position') == 'static') $cont.css('position', 'relative'); if (opts.width) $cont.width(opts.width); if (opts.height && opts.height != 'auto') $cont.height(opts.height);
if (opts.startingSlide !== undefined) { opts.startingSlide = parseInt(opts.startingSlide,10); if (opts.startingSlide >= els.length || opts.startSlide < 0) opts.startingSlide = 0; // catch bogus input else startingSlideSpecified = true; } else if (opts.backwards) opts.startingSlide = els.length - 1; else opts.startingSlide = 0;
// if random, mix up the slide array if (opts.random) { opts.randomMap = []; for (var i = 0; i < els.length; i++) opts.randomMap.push(i); opts.randomMap.sort(function(a,b) {return Math.random() - 0.5;}); if (startingSlideSpecified) { // try to find the specified starting slide and if found set start slide index in the map accordingly for ( var cnt = 0; cnt < els.length; cnt++ ) { if ( opts.startingSlide == opts.randomMap[cnt] ) { opts.randomIndex = cnt; } } } else { opts.randomIndex = 1; opts.startingSlide = opts.randomMap[1]; } } else if (opts.startingSlide >= els.length) opts.startingSlide = 0; // catch bogus input opts.currSlide = opts.startingSlide || 0; var first = opts.startingSlide;
// set position and zIndex on all the slides $slides.css({position: 'absolute', top:0, left:0}).hide().each(function(i) { var z; if (opts.backwards) z = first ? i <= first ? els.length + (i-first) : first-i : els.length-i; else z = first ? i >= first ? els.length - (i-first) : first-i : els.length-i; $(this).css('z-index', z); });
// make sure first slide is visible $(els[first]).css('opacity',1).show(); // opacity bit needed to handle restart use case removeFilter(els[first], opts);
// stretch slides if (opts.fit) { if (!opts.aspect) { if (opts.width) $slides.width(opts.width); if (opts.height && opts.height != 'auto') $slides.height(opts.height); } else { $slides.each(function(){ var $slide = $(this); var ratio = (opts.aspect === true) ? $slide.width()/$slide.height() : opts.aspect; if( opts.width && $slide.width() != opts.width ) { $slide.width( opts.width ); $slide.height( opts.width / ratio ); }
if( opts.height && $slide.height() < opts.height ) { $slide.height( opts.height ); $slide.width( opts.height * ratio ); } }); } }
if (opts.center && ((!opts.fit) || opts.aspect)) { $slides.each(function(){ var $slide = $(this); $slide.css({ "margin-left": opts.width ? ((opts.width - $slide.width()) / 2) + "px" : 0, "margin-top": opts.height ? ((opts.height - $slide.height()) / 2) + "px" : 0 }); }); }
if (opts.center && !opts.fit && !opts.slideResize) { $slides.each(function(){ var $slide = $(this); $slide.css({ "margin-left": opts.width ? ((opts.width - $slide.width()) / 2) + "px" : 0, "margin-top": opts.height ? ((opts.height - $slide.height()) / 2) + "px" : 0 }); }); }
// stretch container var reshape = (opts.containerResize || opts.containerResizeHeight) && $cont.innerHeight() < 1; if (reshape) { // do this only if container has no size http://tinyurl.com/da2oa9 var maxw = 0, maxh = 0; for(var j=0; j < els.length; j++) { var $e = $(els[j]), e = $e[0], w = $e.outerWidth(), h = $e.outerHeight(); if (!w) w = e.offsetWidth || e.width || $e.attr('width'); if (!h) h = e.offsetHeight || e.height || $e.attr('height'); maxw = w > maxw ? w : maxw; maxh = h > maxh ? h : maxh; } if (opts.containerResize && maxw > 0 && maxh > 0) $cont.css({width:maxw+'px',height:maxh+'px'}); if (opts.containerResizeHeight && maxh > 0) $cont.css({height:maxh+'px'}); }
var pauseFlag = false; // https://github.com/malsup/cycle/issues/44 if (opts.pause) $cont.bind('mouseenter.cycle', function(){ pauseFlag = true; this.cyclePause++; triggerPause(cont, true); }).bind('mouseleave.cycle', function(){ if (pauseFlag) this.cyclePause--; triggerPause(cont, true); });
if (supportMultiTransitions(opts) === false) return false;
// apparently a lot of people use image slideshows without height/width attributes on the images. // Cycle 2.50+ requires the sizing info for every slide; this block tries to deal with that. var requeue = false; options.requeueAttempts = options.requeueAttempts || 0; $slides.each(function() { // try to get height/width of each slide var $el = $(this); this.cycleH = (opts.fit && opts.height) ? opts.height : ($el.height() || this.offsetHeight || this.height || $el.attr('height') || 0); this.cycleW = (opts.fit && opts.width) ? opts.width : ($el.width() || this.offsetWidth || this.width || $el.attr('width') || 0);
if ( $el.is('img') ) { var loading = (this.cycleH === 0 && this.cycleW === 0 && !this.complete); // don't requeue for images that are still loading but have a valid size if (loading) { if (o.s && opts.requeueOnImageNotLoaded && ++options.requeueAttempts < 100) { // track retry count so we don't loop forever log(options.requeueAttempts,' - img slide not loaded, requeuing slideshow: ', this.src, this.cycleW, this.cycleH); setTimeout(function() {$(o.s,o.c).cycle(options);}, opts.requeueTimeout); requeue = true; return false; // break each loop } else { log('could not determine size of image: '+this.src, this.cycleW, this.cycleH); } } } return true; });
if (requeue) return false;
opts.cssBefore = opts.cssBefore || {}; opts.cssAfter = opts.cssAfter || {}; opts.cssFirst = opts.cssFirst || {}; opts.animIn = opts.animIn || {}; opts.animOut = opts.animOut || {};
$slides.not(':eq('+first+')').css(opts.cssBefore); $($slides[first]).css(opts.cssFirst);
if (opts.timeout) { opts.timeout = parseInt(opts.timeout,10); // ensure that timeout and speed settings are sane if (opts.speed.constructor == String) opts.speed = $.fx.speeds[opts.speed] || parseInt(opts.speed,10); if (!opts.sync) opts.speed = opts.speed / 2;
var buffer = opts.fx == 'none' ? 0 : opts.fx == 'shuffle' ? 500 : 250; while((opts.timeout - opts.speed) < buffer) // sanitize timeout opts.timeout += opts.speed; } if (opts.easing) opts.easeIn = opts.easeOut = opts.easing; if (!opts.speedIn) opts.speedIn = opts.speed; if (!opts.speedOut) opts.speedOut = opts.speed;
opts.slideCount = els.length; opts.currSlide = opts.lastSlide = first; if (opts.random) { if (++opts.randomIndex == els.length) opts.randomIndex = 0; opts.nextSlide = opts.randomMap[opts.randomIndex]; } else if (opts.backwards) opts.nextSlide = opts.startingSlide === 0 ? (els.length-1) : opts.startingSlide-1; else opts.nextSlide = opts.startingSlide >= (els.length-1) ? 0 : opts.startingSlide+1;
// run transition init fn if (!opts.multiFx) { var init = $.fn.cycle.transitions[opts.fx]; if ($.isFunction(init)) init($cont, $slides, opts); else if (opts.fx != 'custom' && !opts.multiFx) { log('unknown transition: ' + opts.fx,'; slideshow terminating'); return false; } }
// fire artificial events var e0 = $slides[first]; if (!opts.skipInitializationCallbacks) { if (opts.before.length) opts.before[0].apply(e0, [e0, e0, opts, true]); if (opts.after.length) opts.after[0].apply(e0, [e0, e0, opts, true]); } if (opts.next) $(opts.next).bind(opts.prevNextEvent,function(){return advance(opts,1);}); if (opts.prev) $(opts.prev).bind(opts.prevNextEvent,function(){return advance(opts,0);}); if (opts.pager || opts.pagerAnchorBuilder) buildPager(els,opts);
exposeAddSlide(opts, els);
return opts; }
// save off original opts so we can restore after clearing state function saveOriginalOpts(opts) { opts.original = { before: [], after: [] }; opts.original.cssBefore = $.extend({}, opts.cssBefore); opts.original.cssAfter = $.extend({}, opts.cssAfter); opts.original.animIn = $.extend({}, opts.animIn); opts.original.animOut = $.extend({}, opts.animOut); $.each(opts.before, function() { opts.original.before.push(this); }); $.each(opts.after, function() { opts.original.after.push(this); }); }
function supportMultiTransitions(opts) { var i, tx, txs = $.fn.cycle.transitions; // look for multiple effects if (opts.fx.indexOf(',') > 0) { opts.multiFx = true; opts.fxs = opts.fx.replace(/\s*/g,).split(','); // discard any bogus effect names for (i=0; i < opts.fxs.length; i++) { var fx = opts.fxs[i]; tx = txs[fx]; if (!tx || !txs.hasOwnProperty(fx) || !$.isFunction(tx)) { log('discarding unknown transition: ',fx); opts.fxs.splice(i,1); i--; } } // if we have an empty list then we threw everything away! if (!opts.fxs.length) { log('No valid transitions named; slideshow terminating.'); return false; } } else if (opts.fx == 'all') { // auto-gen the list of transitions opts.multiFx = true; opts.fxs = []; for (var p in txs) { if (txs.hasOwnProperty(p)) { tx = txs[p]; if (txs.hasOwnProperty(p) && $.isFunction(tx)) opts.fxs.push(p); } } } if (opts.multiFx && opts.randomizeEffects) { // munge the fxs array to make effect selection random var r1 = Math.floor(Math.random() * 20) + 30; for (i = 0; i < r1; i++) { var r2 = Math.floor(Math.random() * opts.fxs.length); opts.fxs.push(opts.fxs.splice(r2,1)[0]); } debug('randomized fx sequence: ',opts.fxs); } return true; }
// provide a mechanism for adding slides after the slideshow has started function exposeAddSlide(opts, els) { opts.addSlide = function(newSlide, prepend) { var $s = $(newSlide), s = $s[0]; if (!opts.autostopCount) opts.countdown++; els[prepend?'unshift':'push'](s); if (opts.els) opts.els[prepend?'unshift':'push'](s); // shuffle needs this opts.slideCount = els.length;
// add the slide to the random map and resort if (opts.random) { opts.randomMap.push(opts.slideCount-1); opts.randomMap.sort(function(a,b) {return Math.random() - 0.5;}); }
$s.css('position','absolute'); $s[prepend?'prependTo':'appendTo'](opts.$cont);
if (prepend) { opts.currSlide++; opts.nextSlide++; }
if (!$.support.opacity && opts.cleartype && !opts.cleartypeNoBg) clearTypeFix($s);
if (opts.fit && opts.width) $s.width(opts.width); if (opts.fit && opts.height && opts.height != 'auto') $s.height(opts.height); s.cycleH = (opts.fit && opts.height) ? opts.height : $s.height(); s.cycleW = (opts.fit && opts.width) ? opts.width : $s.width();
$s.css(opts.cssBefore);
if (opts.pager || opts.pagerAnchorBuilder) $.fn.cycle.createPagerAnchor(els.length-1, s, $(opts.pager), els, opts);
if ($.isFunction(opts.onAddSlide)) opts.onAddSlide($s); else $s.hide(); // default behavior }; }
// reset internal state; we do this on every pass in order to support multiple effects $.fn.cycle.resetState = function(opts, fx) { fx = fx || opts.fx; opts.before = []; opts.after = []; opts.cssBefore = $.extend({}, opts.original.cssBefore); opts.cssAfter = $.extend({}, opts.original.cssAfter); opts.animIn = $.extend({}, opts.original.animIn); opts.animOut = $.extend({}, opts.original.animOut); opts.fxFn = null; $.each(opts.original.before, function() { opts.before.push(this); }); $.each(opts.original.after, function() { opts.after.push(this); });
// re-init var init = $.fn.cycle.transitions[fx]; if ($.isFunction(init)) init(opts.$cont, $(opts.elements), opts); };
// this is the main engine fn, it handles the timeouts, callbacks and slide index mgmt function go(els, opts, manual, fwd) { var p = opts.$cont[0], curr = els[opts.currSlide], next = els[opts.nextSlide];
// opts.busy is true if we're in the middle of an animation if (manual && opts.busy && opts.manualTrump) { // let manual transitions requests trump active ones debug('manualTrump in go(), stopping active transition'); $(els).stop(true,true); opts.busy = 0; clearTimeout(p.cycleTimeout); }
// don't begin another timeout-based transition if there is one active if (opts.busy) { debug('transition active, ignoring new tx request'); return; }
// stop cycling if we have an outstanding stop request
if (p.cycleStop != opts.stopCount || p.cycleTimeout === 0 && !manual)
return;
// check to see if we should stop cycling based on autostop options if (!manual && !p.cyclePause && !opts.bounce && ((opts.autostop && (--opts.countdown <= 0)) || (opts.nowrap && !opts.random && opts.nextSlide < opts.currSlide))) { if (opts.end) opts.end(opts); return; }
// if slideshow is paused, only transition on a manual trigger var changed = false; if ((manual || !p.cyclePause) && (opts.nextSlide != opts.currSlide)) { changed = true; var fx = opts.fx; // keep trying to get the slide size if we don't have it yet curr.cycleH = curr.cycleH || $(curr).height(); curr.cycleW = curr.cycleW || $(curr).width(); next.cycleH = next.cycleH || $(next).height(); next.cycleW = next.cycleW || $(next).width();
// support multiple transition types if (opts.multiFx) { if (fwd && (opts.lastFx === undefined || ++opts.lastFx >= opts.fxs.length)) opts.lastFx = 0; else if (!fwd && (opts.lastFx === undefined || --opts.lastFx < 0)) opts.lastFx = opts.fxs.length - 1; fx = opts.fxs[opts.lastFx]; }
// one-time fx overrides apply to: $('div').cycle(3,'zoom'); if (opts.oneTimeFx) { fx = opts.oneTimeFx; opts.oneTimeFx = null; }
$.fn.cycle.resetState(opts, fx);
// run the before callbacks if (opts.before.length) $.each(opts.before, function(i,o) { if (p.cycleStop != opts.stopCount) return; o.apply(next, [curr, next, opts, fwd]); });
// stage the after callacks var after = function() { opts.busy = 0; $.each(opts.after, function(i,o) { if (p.cycleStop != opts.stopCount) return; o.apply(next, [curr, next, opts, fwd]); }); if (!p.cycleStop) { // queue next transition queueNext(); } };
debug('tx firing('+fx+'); currSlide: ' + opts.currSlide + '; nextSlide: ' + opts.nextSlide);
// get ready to perform the transition opts.busy = 1; if (opts.fxFn) // fx function provided? opts.fxFn(curr, next, opts, after, fwd, manual && opts.fastOnEvent); else if ($.isFunction($.fn.cycle[opts.fx])) // fx plugin ? $.fn.cycle[opts.fx](curr, next, opts, after, fwd, manual && opts.fastOnEvent); else $.fn.cycle.custom(curr, next, opts, after, fwd, manual && opts.fastOnEvent); } else { queueNext(); }
if (changed || opts.nextSlide == opts.currSlide) { // calculate the next slide var roll; opts.lastSlide = opts.currSlide; if (opts.random) { opts.currSlide = opts.nextSlide; if (++opts.randomIndex == els.length) { opts.randomIndex = 0; opts.randomMap.sort(function(a,b) {return Math.random() - 0.5;}); } opts.nextSlide = opts.randomMap[opts.randomIndex]; if (opts.nextSlide == opts.currSlide) opts.nextSlide = (opts.currSlide == opts.slideCount - 1) ? 0 : opts.currSlide + 1; } else if (opts.backwards) { roll = (opts.nextSlide - 1) < 0; if (roll && opts.bounce) { opts.backwards = !opts.backwards; opts.nextSlide = 1; opts.currSlide = 0; } else { opts.nextSlide = roll ? (els.length-1) : opts.nextSlide-1; opts.currSlide = roll ? 0 : opts.nextSlide+1; } } else { // sequence roll = (opts.nextSlide + 1) == els.length; if (roll && opts.bounce) { opts.backwards = !opts.backwards; opts.nextSlide = els.length-2; opts.currSlide = els.length-1; } else { opts.nextSlide = roll ? 0 : opts.nextSlide+1; opts.currSlide = roll ? els.length-1 : opts.nextSlide-1; } } } if (changed && opts.pager) opts.updateActivePagerLink(opts.pager, opts.currSlide, opts.activePagerClass);
function queueNext() { // stage the next transition var ms = 0, timeout = opts.timeout; if (opts.timeout && !opts.continuous) { ms = getTimeout(els[opts.currSlide], els[opts.nextSlide], opts, fwd);
if (opts.fx == 'shuffle')
ms -= opts.speedOut;
}
else if (opts.continuous && p.cyclePause) // continuous shows work off an after callback, not this timer logic ms = 10; if (ms > 0) p.cycleTimeout = setTimeout(function(){ go(els, opts, 0, !opts.backwards); }, ms); } }
// invoked after transition $.fn.cycle.updateActivePagerLink = function(pager, currSlide, clsName) {
$(pager).each(function() {
$(this).children().removeClass(clsName).eq(currSlide).addClass(clsName);
});
};
// calculate timeout value for current transition function getTimeout(curr, next, opts, fwd) { if (opts.timeoutFn) { // call user provided calc fn var t = opts.timeoutFn.call(curr,curr,next,opts,fwd); while (opts.fx != 'none' && (t - opts.speed) < 250) // sanitize timeout t += opts.speed; debug('calculated timeout: ' + t + '; speed: ' + opts.speed); if (t !== false) return t; } return opts.timeout; }
// expose next/prev function, caller must pass in state $.fn.cycle.next = function(opts) { advance(opts,1); }; $.fn.cycle.prev = function(opts) { advance(opts,0);};
// advance slide forward or back function advance(opts, moveForward) { var val = moveForward ? 1 : -1; var els = opts.elements; var p = opts.$cont[0], timeout = p.cycleTimeout; if (timeout) { clearTimeout(timeout); p.cycleTimeout = 0; } if (opts.random && val < 0) { // move back to the previously display slide opts.randomIndex--; if (--opts.randomIndex == -2) opts.randomIndex = els.length-2; else if (opts.randomIndex == -1) opts.randomIndex = els.length-1; opts.nextSlide = opts.randomMap[opts.randomIndex]; } else if (opts.random) { opts.nextSlide = opts.randomMap[opts.randomIndex]; } else { opts.nextSlide = opts.currSlide + val; if (opts.nextSlide < 0) { if (opts.nowrap) return false; opts.nextSlide = els.length - 1; } else if (opts.nextSlide >= els.length) { if (opts.nowrap) return false; opts.nextSlide = 0; } }
var cb = opts.onPrevNextEvent || opts.prevNextClick; // prevNextClick is deprecated if ($.isFunction(cb)) cb(val > 0, opts.nextSlide, els[opts.nextSlide]); go(els, opts, 1, moveForward); return false; }
function buildPager(els, opts) { var $p = $(opts.pager); $.each(els, function(i,o) { $.fn.cycle.createPagerAnchor(i,o,$p,els,opts); }); opts.updateActivePagerLink(opts.pager, opts.startingSlide, opts.activePagerClass); }
$.fn.cycle.createPagerAnchor = function(i, el, $p, els, opts) { var a; if ($.isFunction(opts.pagerAnchorBuilder)) { a = opts.pagerAnchorBuilder(i,el); debug('pagerAnchorBuilder('+i+', el) returned: ' + a); } else a = '<a href="#">'+(i+1)+'</a>';
if (!a) return; var $a = $(a); // don't reparent if anchor is in the dom if ($a.parents('body').length === 0) { var arr = []; if ($p.length > 1) { $p.each(function() { var $clone = $a.clone(true); $(this).append($clone); arr.push($clone[0]); }); $a = $(arr); } else { $a.appendTo($p); } }
opts.pagerAnchors = opts.pagerAnchors || []; opts.pagerAnchors.push($a);
var pagerFn = function(e) { e.preventDefault(); opts.nextSlide = i; var p = opts.$cont[0], timeout = p.cycleTimeout; if (timeout) { clearTimeout(timeout); p.cycleTimeout = 0; } var cb = opts.onPagerEvent || opts.pagerClick; // pagerClick is deprecated if ($.isFunction(cb)) cb(opts.nextSlide, els[opts.nextSlide]); go(els,opts,1,opts.currSlide < i); // trigger the trans // return false; // <== allow bubble };
if ( /mouseenter|mouseover/i.test(opts.pagerEvent) ) { $a.hover(pagerFn, function(){/* no-op */} ); } else { $a.bind(opts.pagerEvent, pagerFn); }
if ( ! /^click/.test(opts.pagerEvent) && !opts.allowPagerClickBubble) $a.bind('click.cycle', function(){return false;}); // suppress click
var cont = opts.$cont[0]; var pauseFlag = false; // https://github.com/malsup/cycle/issues/44 if (opts.pauseOnPagerHover) { $a.hover( function() { pauseFlag = true; cont.cyclePause++; triggerPause(cont,true,true); }, function() { if (pauseFlag) cont.cyclePause--; triggerPause(cont,true,true); } ); } };
// helper fn to calculate the number of slides between the current and the next $.fn.cycle.hopsFromLast = function(opts, fwd) { var hops, l = opts.lastSlide, c = opts.currSlide; if (fwd) hops = c > l ? c - l : opts.slideCount - l; else hops = c < l ? l - c : l + opts.slideCount - c; return hops; };
// fix clearType problems in ie6 by setting an explicit bg color // (otherwise text slides look horrible during a fade transition) function clearTypeFix($slides) { debug('applying clearType background-color hack'); function hex(s) { s = parseInt(s,10).toString(16); return s.length < 2 ? '0'+s : s; } function getBg(e) { for ( ; e && e.nodeName.toLowerCase() != 'html'; e = e.parentNode) { var v = $.css(e,'background-color'); if (v && v.indexOf('rgb') >= 0 ) { var rgb = v.match(/\d+/g); return '#'+ hex(rgb[0]) + hex(rgb[1]) + hex(rgb[2]); } if (v && v != 'transparent') return v; } return '#ffffff'; } $slides.each(function() { $(this).css('background-color', getBg(this)); }); }
// reset common props before the next transition $.fn.cycle.commonReset = function(curr,next,opts,w,h,rev) { $(opts.elements).not(curr).hide(); if (typeof opts.cssBefore.opacity == 'undefined') opts.cssBefore.opacity = 1; opts.cssBefore.display = 'block'; if (opts.slideResize && w !== false && next.cycleW > 0) opts.cssBefore.width = next.cycleW; if (opts.slideResize && h !== false && next.cycleH > 0) opts.cssBefore.height = next.cycleH; opts.cssAfter = opts.cssAfter || {}; opts.cssAfter.display = 'none'; $(curr).css('zIndex',opts.slideCount + (rev === true ? 1 : 0)); $(next).css('zIndex',opts.slideCount + (rev === true ? 0 : 1)); };
// the actual fn for effecting a transition $.fn.cycle.custom = function(curr, next, opts, cb, fwd, speedOverride) { var $l = $(curr), $n = $(next); var speedIn = opts.speedIn, speedOut = opts.speedOut, easeIn = opts.easeIn, easeOut = opts.easeOut, animInDelay = opts.animInDelay, animOutDelay = opts.animOutDelay; $n.css(opts.cssBefore); if (speedOverride) { if (typeof speedOverride == 'number') speedIn = speedOut = speedOverride; else speedIn = speedOut = 1; easeIn = easeOut = null; } var fn = function() { $n.delay(animInDelay).animate(opts.animIn, speedIn, easeIn, function() { cb(); }); }; $l.delay(animOutDelay).animate(opts.animOut, speedOut, easeOut, function() { $l.css(opts.cssAfter); if (!opts.sync) fn(); }); if (opts.sync) fn(); };
// transition definitions - only fade is defined here, transition pack defines the rest $.fn.cycle.transitions = { fade: function($cont, $slides, opts) { $slides.not(':eq('+opts.currSlide+')').css('opacity',0); opts.before.push(function(curr,next,opts) { $.fn.cycle.commonReset(curr,next,opts); opts.cssBefore.opacity = 0; }); opts.animIn = { opacity: 1 }; opts.animOut = { opacity: 0 }; opts.cssBefore = { top: 0, left: 0 }; } };
$.fn.cycle.ver = function() { return ver; };
// override these globally if you like (they are all optional) $.fn.cycle.defaults = {
activePagerClass: 'activeSlide', // class name used for the active pager link
after: null, // transition callback (scope set to element that was shown): function(currSlideElement, nextSlideElement, options, forwardFlag)
allowPagerClickBubble: false, // allows or prevents click event on pager anchors from bubbling
animIn: null, // properties that define how the slide animates in
animInDelay: 0, // allows delay before next slide transitions in
animOut: null, // properties that define how the slide animates out
animOutDelay: 0, // allows delay before current slide transitions out
aspect: false, // preserve aspect ratio during fit resizing, cropping if necessary (must be used with fit option)
autostop: 0, // true to end slideshow after X transitions (where X == slide count)
autostopCount: 0, // number of transitions (optionally used with autostop to define X)
backwards: false, // true to start slideshow at last slide and move backwards through the stack
before: null, // transition callback (scope set to element to be shown): function(currSlideElement, nextSlideElement, options, forwardFlag)
center: null, // set to true to have cycle add top/left margin to each slide (use with width and height options)
cleartype: !$.support.opacity, // true if clearType corrections should be applied (for IE)
cleartypeNoBg: false, // set to true to disable extra cleartype fixing (leave false to force background color setting on slides)
containerResize: 1, // resize container to fit largest slide
containerResizeHeight: 0, // resize containers height to fit the largest slide but leave the width dynamic
continuous: 0, // true to start next transition immediately after current one completes
cssAfter: null, // properties that defined the state of the slide after transitioning out
cssBefore: null, // properties that define the initial state of the slide before transitioning in
delay: 0, // additional delay (in ms) for first transition (hint: can be negative)
easeIn: null, // easing for "in" transition
easeOut: null, // easing for "out" transition
easing: null, // easing method for both in and out transitions
end: null, // callback invoked when the slideshow terminates (use with autostop or nowrap options): function(options)
fastOnEvent: 0, // force fast transitions when triggered manually (via pager or prev/next); value == time in ms
fit: 0, // force slides to fit container
fx: 'fade', // name of transition effect (or comma separated names, ex: 'fade,scrollUp,shuffle')
fxFn: null, // function used to control the transition: function(currSlideElement, nextSlideElement, options, afterCalback, forwardFlag)
height: 'auto', // container height (if the 'fit' option is true, the slides will be set to this height as well)
manualTrump: true, // causes manual transition to stop an active transition instead of being ignored
metaAttr: 'cycle', // data- attribute that holds the option data for the slideshow
next: null, // element, jQuery object, or jQuery selector string for the element to use as event trigger for next slide
nowrap: 0, // true to prevent slideshow from wrapping
onPagerEvent: null, // callback fn for pager events: function(zeroBasedSlideIndex, slideElement)
onPrevNextEvent: null, // callback fn for prev/next events: function(isNext, zeroBasedSlideIndex, slideElement)
pager: null, // element, jQuery object, or jQuery selector string for the element to use as pager container
pagerAnchorBuilder: null, // callback fn for building anchor links: function(index, DOMelement)
pagerEvent: 'click.cycle', // name of event which drives the pager navigation
pause: 0, // true to enable "pause on hover"
pauseOnPagerHover: 0, // true to pause when hovering over pager link
prev: null, // element, jQuery object, or jQuery selector string for the element to use as event trigger for previous slide
prevNextEvent: 'click.cycle',// event which drives the manual transition to the previous or next slide
random: 0, // true for random, false for sequence (not applicable to shuffle fx)
randomizeEffects: 1, // valid when multiple effects are used; true to make the effect sequence random
requeueOnImageNotLoaded: true, // requeue the slideshow if any image slides are not yet loaded
requeueTimeout: 250, // ms delay for requeue
rev: 0, // causes animations to transition in reverse (for effects that support it such as scrollHorz/scrollVert/shuffle)
shuffle: null, // coords for shuffle animation, ex: { top:15, left: 200 }
skipInitializationCallbacks: false, // set to true to disable the first before/after callback that occurs prior to any transition
slideExpr: null, // expression for selecting slides (if something other than all children is required)
slideResize: 1, // force slide width/height to fixed size before every transition
speed: 1000, // speed of the transition (any valid fx speed value)
speedIn: null, // speed of the 'in' transition
speedOut: null, // speed of the 'out' transition
startingSlide: undefined,// zero-based index of the first slide to be displayed
sync: 1, // true if in/out transitions should occur simultaneously
timeout: 4000, // milliseconds between slide transitions (0 to disable auto advance)
timeoutFn: null, // callback for determining per-slide timeout value: function(currSlideElement, nextSlideElement, options, forwardFlag)
updateActivePagerLink: null,// callback fn invoked to update the active pager link (adds/removes activePagerClass style)
width: null // container width (if the 'fit' option is true, the slides will be set to this width as well)
};
})(jQuery);
/*!
* jQuery Cycle Plugin Transition Definitions * This script is a plugin for the jQuery Cycle Plugin * Examples and documentation at: http://malsup.com/jquery/cycle/ * Copyright (c) 2007-2010 M. Alsup * Version: 2.73 * Dual licensed under the MIT and GPL licenses: * http://www.opensource.org/licenses/mit-license.php * http://www.gnu.org/licenses/gpl.html */
(function($) { "use strict";
// // These functions define slide initialization and properties for the named // transitions. To save file size feel free to remove any of these that you // don't need. // $.fn.cycle.transitions.none = function($cont, $slides, opts) { opts.fxFn = function(curr,next,opts,after){ $(next).show(); $(curr).hide(); after(); }; };
// not a cross-fade, fadeout only fades out the top slide $.fn.cycle.transitions.fadeout = function($cont, $slides, opts) { $slides.not(':eq('+opts.currSlide+')').css({ display: 'block', 'opacity': 1 }); opts.before.push(function(curr,next,opts,w,h,rev) { $(curr).css('zIndex',opts.slideCount + (rev !== true ? 1 : 0)); $(next).css('zIndex',opts.slideCount + (rev !== true ? 0 : 1)); }); opts.animIn.opacity = 1; opts.animOut.opacity = 0; opts.cssBefore.opacity = 1; opts.cssBefore.display = 'block'; opts.cssAfter.zIndex = 0; };
// scrollUp/Down/Left/Right $.fn.cycle.transitions.scrollUp = function($cont, $slides, opts) { $cont.css('overflow','hidden'); opts.before.push($.fn.cycle.commonReset); var h = $cont.height(); opts.cssBefore.top = h; opts.cssBefore.left = 0; opts.cssFirst.top = 0; opts.animIn.top = 0; opts.animOut.top = -h; }; $.fn.cycle.transitions.scrollDown = function($cont, $slides, opts) { $cont.css('overflow','hidden'); opts.before.push($.fn.cycle.commonReset); var h = $cont.height(); opts.cssFirst.top = 0; opts.cssBefore.top = -h; opts.cssBefore.left = 0; opts.animIn.top = 0; opts.animOut.top = h; }; $.fn.cycle.transitions.scrollLeft = function($cont, $slides, opts) { $cont.css('overflow','hidden'); opts.before.push($.fn.cycle.commonReset); var w = $cont.width(); opts.cssFirst.left = 0; opts.cssBefore.left = w; opts.cssBefore.top = 0; opts.animIn.left = 0; opts.animOut.left = 0-w; }; $.fn.cycle.transitions.scrollRight = function($cont, $slides, opts) { $cont.css('overflow','hidden'); opts.before.push($.fn.cycle.commonReset); var w = $cont.width(); opts.cssFirst.left = 0; opts.cssBefore.left = -w; opts.cssBefore.top = 0; opts.animIn.left = 0; opts.animOut.left = w; }; $.fn.cycle.transitions.scrollHorz = function($cont, $slides, opts) { $cont.css('overflow','hidden').width(); opts.before.push(function(curr, next, opts, fwd) { if (opts.rev) fwd = !fwd; $.fn.cycle.commonReset(curr,next,opts); opts.cssBefore.left = fwd ? (next.cycleW-1) : (1-next.cycleW); opts.animOut.left = fwd ? -curr.cycleW : curr.cycleW; }); opts.cssFirst.left = 0; opts.cssBefore.top = 0; opts.animIn.left = 0; opts.animOut.top = 0; }; $.fn.cycle.transitions.scrollVert = function($cont, $slides, opts) { $cont.css('overflow','hidden'); opts.before.push(function(curr, next, opts, fwd) { if (opts.rev) fwd = !fwd; $.fn.cycle.commonReset(curr,next,opts); opts.cssBefore.top = fwd ? (1-next.cycleH) : (next.cycleH-1); opts.animOut.top = fwd ? curr.cycleH : -curr.cycleH; }); opts.cssFirst.top = 0; opts.cssBefore.left = 0; opts.animIn.top = 0; opts.animOut.left = 0; };
// slideX/slideY $.fn.cycle.transitions.slideX = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $(opts.elements).not(curr).hide(); $.fn.cycle.commonReset(curr,next,opts,false,true); opts.animIn.width = next.cycleW; }); opts.cssBefore.left = 0; opts.cssBefore.top = 0; opts.cssBefore.width = 0; opts.animIn.width = 'show'; opts.animOut.width = 0; }; $.fn.cycle.transitions.slideY = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $(opts.elements).not(curr).hide(); $.fn.cycle.commonReset(curr,next,opts,true,false); opts.animIn.height = next.cycleH; }); opts.cssBefore.left = 0; opts.cssBefore.top = 0; opts.cssBefore.height = 0; opts.animIn.height = 'show'; opts.animOut.height = 0; };
// shuffle $.fn.cycle.transitions.shuffle = function($cont, $slides, opts) { var i, w = $cont.css('overflow', 'visible').width(); $slides.css({left: 0, top: 0}); opts.before.push(function(curr,next,opts) { $.fn.cycle.commonReset(curr,next,opts,true,true,true); }); // only adjust speed once! if (!opts.speedAdjusted) { opts.speed = opts.speed / 2; // shuffle has 2 transitions opts.speedAdjusted = true; } opts.random = 0; opts.shuffle = opts.shuffle || {left:-w, top:15}; opts.els = []; for (i=0; i < $slides.length; i++) opts.els.push($slides[i]);
for (i=0; i < opts.currSlide; i++) opts.els.push(opts.els.shift());
// custom transition fn (hat tip to Benjamin Sterling for this bit of sweetness!) opts.fxFn = function(curr, next, opts, cb, fwd) { if (opts.rev) fwd = !fwd; var $el = fwd ? $(curr) : $(next); $(next).css(opts.cssBefore); var count = opts.slideCount; $el.animate(opts.shuffle, opts.speedIn, opts.easeIn, function() { var hops = $.fn.cycle.hopsFromLast(opts, fwd); for (var k=0; k < hops; k++) { if (fwd) opts.els.push(opts.els.shift()); else opts.els.unshift(opts.els.pop()); } if (fwd) { for (var i=0, len=opts.els.length; i < len; i++) $(opts.els[i]).css('z-index', len-i+count); } else { var z = $(curr).css('z-index'); $el.css('z-index', parseInt(z,10)+1+count); } $el.animate({left:0, top:0}, opts.speedOut, opts.easeOut, function() { $(fwd ? this : curr).hide(); if (cb) cb(); }); }); }; $.extend(opts.cssBefore, { display: 'block', opacity: 1, top: 0, left: 0 }); };
// turnUp/Down/Left/Right $.fn.cycle.transitions.turnUp = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,false); opts.cssBefore.top = next.cycleH; opts.animIn.height = next.cycleH; opts.animOut.width = next.cycleW; }); opts.cssFirst.top = 0; opts.cssBefore.left = 0; opts.cssBefore.height = 0; opts.animIn.top = 0; opts.animOut.height = 0; }; $.fn.cycle.transitions.turnDown = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,false); opts.animIn.height = next.cycleH; opts.animOut.top = curr.cycleH; }); opts.cssFirst.top = 0; opts.cssBefore.left = 0; opts.cssBefore.top = 0; opts.cssBefore.height = 0; opts.animOut.height = 0; }; $.fn.cycle.transitions.turnLeft = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,true); opts.cssBefore.left = next.cycleW; opts.animIn.width = next.cycleW; }); opts.cssBefore.top = 0; opts.cssBefore.width = 0; opts.animIn.left = 0; opts.animOut.width = 0; }; $.fn.cycle.transitions.turnRight = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,true); opts.animIn.width = next.cycleW; opts.animOut.left = curr.cycleW; }); $.extend(opts.cssBefore, { top: 0, left: 0, width: 0 }); opts.animIn.left = 0; opts.animOut.width = 0; };
// zoom $.fn.cycle.transitions.zoom = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,false,true); opts.cssBefore.top = next.cycleH/2; opts.cssBefore.left = next.cycleW/2; $.extend(opts.animIn, { top: 0, left: 0, width: next.cycleW, height: next.cycleH }); $.extend(opts.animOut, { width: 0, height: 0, top: curr.cycleH/2, left: curr.cycleW/2 }); }); opts.cssFirst.top = 0; opts.cssFirst.left = 0; opts.cssBefore.width = 0; opts.cssBefore.height = 0; };
// fadeZoom $.fn.cycle.transitions.fadeZoom = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,false); opts.cssBefore.left = next.cycleW/2; opts.cssBefore.top = next.cycleH/2; $.extend(opts.animIn, { top: 0, left: 0, width: next.cycleW, height: next.cycleH }); }); opts.cssBefore.width = 0; opts.cssBefore.height = 0; opts.animOut.opacity = 0; };
// blindX $.fn.cycle.transitions.blindX = function($cont, $slides, opts) { var w = $cont.css('overflow','hidden').width(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts); opts.animIn.width = next.cycleW; opts.animOut.left = curr.cycleW; }); opts.cssBefore.left = w; opts.cssBefore.top = 0; opts.animIn.left = 0; opts.animOut.left = w; }; // blindY $.fn.cycle.transitions.blindY = function($cont, $slides, opts) { var h = $cont.css('overflow','hidden').height(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts); opts.animIn.height = next.cycleH; opts.animOut.top = curr.cycleH; }); opts.cssBefore.top = h; opts.cssBefore.left = 0; opts.animIn.top = 0; opts.animOut.top = h; }; // blindZ $.fn.cycle.transitions.blindZ = function($cont, $slides, opts) { var h = $cont.css('overflow','hidden').height(); var w = $cont.width(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts); opts.animIn.height = next.cycleH; opts.animOut.top = curr.cycleH; }); opts.cssBefore.top = h; opts.cssBefore.left = w; opts.animIn.top = 0; opts.animIn.left = 0; opts.animOut.top = h; opts.animOut.left = w; };
// growX - grow horizontally from centered 0 width $.fn.cycle.transitions.growX = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,true); opts.cssBefore.left = this.cycleW/2; opts.animIn.left = 0; opts.animIn.width = this.cycleW; opts.animOut.left = 0; }); opts.cssBefore.top = 0; opts.cssBefore.width = 0; }; // growY - grow vertically from centered 0 height $.fn.cycle.transitions.growY = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,false); opts.cssBefore.top = this.cycleH/2; opts.animIn.top = 0; opts.animIn.height = this.cycleH; opts.animOut.top = 0; }); opts.cssBefore.height = 0; opts.cssBefore.left = 0; };
// curtainX - squeeze in both edges horizontally $.fn.cycle.transitions.curtainX = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,false,true,true); opts.cssBefore.left = next.cycleW/2; opts.animIn.left = 0; opts.animIn.width = this.cycleW; opts.animOut.left = curr.cycleW/2; opts.animOut.width = 0; }); opts.cssBefore.top = 0; opts.cssBefore.width = 0; }; // curtainY - squeeze in both edges vertically $.fn.cycle.transitions.curtainY = function($cont, $slides, opts) { opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,false,true); opts.cssBefore.top = next.cycleH/2; opts.animIn.top = 0; opts.animIn.height = next.cycleH; opts.animOut.top = curr.cycleH/2; opts.animOut.height = 0; }); opts.cssBefore.height = 0; opts.cssBefore.left = 0; };
// cover - curr slide covered by next slide $.fn.cycle.transitions.cover = function($cont, $slides, opts) { var d = opts.direction || 'left'; var w = $cont.css('overflow','hidden').width(); var h = $cont.height(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts); opts.cssAfter.display = ; if (d == 'right') opts.cssBefore.left = -w; else if (d == 'up') opts.cssBefore.top = h; else if (d == 'down') opts.cssBefore.top = -h; else opts.cssBefore.left = w; }); opts.animIn.left = 0; opts.animIn.top = 0; opts.cssBefore.top = 0; opts.cssBefore.left = 0; };
// uncover - curr slide moves off next slide $.fn.cycle.transitions.uncover = function($cont, $slides, opts) { var d = opts.direction || 'left'; var w = $cont.css('overflow','hidden').width(); var h = $cont.height(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,true,true); if (d == 'right') opts.animOut.left = w; else if (d == 'up') opts.animOut.top = -h; else if (d == 'down') opts.animOut.top = h; else opts.animOut.left = -w; }); opts.animIn.left = 0; opts.animIn.top = 0; opts.cssBefore.top = 0; opts.cssBefore.left = 0; };
// toss - move top slide and fade away $.fn.cycle.transitions.toss = function($cont, $slides, opts) { var w = $cont.css('overflow','visible').width(); var h = $cont.height(); opts.before.push(function(curr, next, opts) { $.fn.cycle.commonReset(curr,next,opts,true,true,true); // provide default toss settings if animOut not provided if (!opts.animOut.left && !opts.animOut.top) $.extend(opts.animOut, { left: w*2, top: -h/2, opacity: 0 }); else opts.animOut.opacity = 0; }); opts.cssBefore.left = 0; opts.cssBefore.top = 0; opts.animIn.left = 0; };
// wipe - clip animation $.fn.cycle.transitions.wipe = function($cont, $slides, opts) { var w = $cont.css('overflow','hidden').width(); var h = $cont.height(); opts.cssBefore = opts.cssBefore || {}; var clip; if (opts.clip) { if (/l2r/.test(opts.clip)) clip = 'rect(0px 0px '+h+'px 0px)'; else if (/r2l/.test(opts.clip)) clip = 'rect(0px '+w+'px '+h+'px '+w+'px)'; else if (/t2b/.test(opts.clip)) clip = 'rect(0px '+w+'px 0px 0px)'; else if (/b2t/.test(opts.clip)) clip = 'rect('+h+'px '+w+'px '+h+'px 0px)'; else if (/zoom/.test(opts.clip)) { var top = parseInt(h/2,10); var left = parseInt(w/2,10); clip = 'rect('+top+'px '+left+'px '+top+'px '+left+'px)'; } }
opts.cssBefore.clip = opts.cssBefore.clip || clip || 'rect(0px 0px 0px 0px)';
var d = opts.cssBefore.clip.match(/(\d+)/g); var t = parseInt(d[0],10), r = parseInt(d[1],10), b = parseInt(d[2],10), l = parseInt(d[3],10);
opts.before.push(function(curr, next, opts) { if (curr == next) return; var $curr = $(curr), $next = $(next); $.fn.cycle.commonReset(curr,next,opts,true,true,false); opts.cssAfter.display = 'block';
var step = 1, count = parseInt((opts.speedIn / 13),10) - 1; (function f() { var tt = t ? t - parseInt(step * (t/count),10) : 0; var ll = l ? l - parseInt(step * (l/count),10) : 0; var bb = b < h ? b + parseInt(step * ((h-b)/count || 1),10) : h; var rr = r < w ? r + parseInt(step * ((w-r)/count || 1),10) : w; $next.css({ clip: 'rect('+tt+'px '+rr+'px '+bb+'px '+ll+'px)' }); (step++ <= count) ? setTimeout(f, 13) : $curr.css('display', 'none'); })(); }); $.extend(opts.cssBefore, { display: 'block', opacity: 1, top: 0, left: 0 }); opts.animIn = { left: 0 }; opts.animOut = { left: 0 }; };
})(jQuery);
The diatom Phaeodactylum tricornutum is a widely spread organism in marine and limnic waters. Together with about 6000 other species, diatoms belong to the phylum of heterokonts. As a group of great ecological relevance diatoms are responsible for up to 20% of the global CO2 fixation and generate about 40 % of the marine biomass of primary producers (Falkowski et al., 1998, Field et al., 1998).
In addition, diatoms represent an important source of lipids and silicate making them interesting for various biotechnological applications e.g. in biofuel industry, food industry and nanofabrication. "Classical" biotechnology is applied in bacteria, yeast and other fungi. Both need to be fed with carbon sources and the purification of the desired products e.g. high-value proteins is cost intensive, very time consuming and difficult. This is due to the fact that the cells need to be disrupted hence proteins/metabolites have to be removed from the medium.
By using a green cell factory of plants or algae it is possible to produce all kinds of products even high-value proteins like human antibodies in a large scale background. Looking at previous iGEM-projects we recognized that no green chassis was ever introduced into the competition although these organisms perform photosynthesis which enables a carbon dioxide neutral handling. In the photosynthetic process light energy is converted into chemical energy which can be used to fuel different cellular reactions in the cell. Concerning the problem of global warming these organisms offer the possibility to reduce the emission of green house gases and work against the extensive use of fossil fuels. Moreover it is not necessary to feed green algal cell factories with carbohydrates. The world population is continuously growing resulting in a scarceness of nutritions. Our team wants to introduce a green cell factory which is driven by sunlight, produces no carbon dioxide and above all does not compete with the nutrition producing sector.
The microalga P. tricornutum is a green organism incorporating all above mentioned advantages of a green bioreactor. This organism is living from CO2 and light and is able to produce substances like bioplastic, biofuels, spider silk and complex proteins. In our project we decided to produce human antibodies against Hepatitis B. The benefit of proteins produced by P. tricornutum is that the posttranslational modifications fit the human system and need no further adaptations. Another important point is that the desired antibodies are secreted into the pure surrounding medium, so that the purification of the desired product can be omitted. As a plant, microalgae do not secret any other substances and therefore all products produced in Phaectory are already present in a high purity (Hempel et al., 2011).
In order to introduce this organism as a chassis to the iGEM community, we build a toolbox of expression vectors, promoters, selection markers, reporter proteins and signal peptides for P. tricornutum. This allows every future iGEM team to produce their own complex proteins, which can easily be extracted.
Phaectory: Phaeodactylum tricornutum as a bioreactor
