Team:ETH Zurich/Modeling/InitialStates

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<h1> INITIAL STATES </h1>
<h1> INITIAL STATES </h1>
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<p align = ''justify''> Is important to obtain the initial concentration of some of the species in our circuit, since these values can be used as biologically meaningful initial conditions for subsequent simulations. The initial values describe the state of the cells at the start of the simulation, i.e. placing cells into the agar plate coming from overnight liquid cultures. Should be noted that when the receiver cells grow, they don't have any OHHL in their culture and this affects the concentrations of intracellular species whose production depends on it.</p>
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<p align = ''justify''> Is important to obtain the steady state concentration of some of the species in our circuit, since these values can be used as biologically meaningful initial conditions for subsequent simulations. When cells are placed on the agar plate, they come from an overnight liquid culture, thus we are assuming that the cells have reached the steady state. Should be noted that when the receiver cells grow, there is not OHHL in the medium and this affects the concentrations of intracellular species whose production depends on it.</p>
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<h1> Initial state for the Mine Cells </h1>
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[[File:InitialConMine.png|500px|center|thumb|<b>Figure 1:</b> Steady state concentrations of Mine Cell species.]]
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Revision as of 00:26, 3 October 2013

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INITIAL STATES

Is important to obtain the steady state concentration of some of the species in our circuit, since these values can be used as biologically meaningful initial conditions for subsequent simulations. When cells are placed on the agar plate, they come from an overnight liquid culture, thus we are assuming that the cells have reached the steady state. Should be noted that when the receiver cells grow, there is not OHHL in the medium and this affects the concentrations of intracellular species whose production depends on it.

Initial state for the Mine Cells

Figure 1: Steady state concentrations of Mine Cell species.