Team:ETH Zurich/Parameter

From 2013.igem.org

(Difference between revisions)
Line 23: Line 23:
<td>4.9 x 10<sup>-6</sup> cm<sup>2</sup>/s</td>
<td>4.9 x 10<sup>-6</sup> cm<sup>2</sup>/s</td>
<td>AHL diffusion constant</td>
<td>AHL diffusion constant</td>
-
<td></td>
+
<td>Stewart P.S., 2003</td>
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<td>0.9</td>
<td>0.9</td>
<td> Reduced diffusion coefficient</td>
<td> Reduced diffusion coefficient</td>
-
<td>row 2, cell 4</td>
+
<td>Fatin-Rouge <i>et al.</i>, 2004</td>
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Line 35: Line 35:
<td>0.01 min<sup>-1</sup></td>
<td>0.01 min<sup>-1</sup></td>
<td>AHL synthesis rate</td>
<td>AHL synthesis rate</td>
-
<td>row 3, cell 4</td>
+
<td>   </td>
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Line 47: Line 47:
<td>4.8135 x 10<sup>-4</sup>min<sup>-1</sup></td>
<td>4.8135 x 10<sup>-4</sup>min<sup>-1</sup></td>
<td>AHL degradation rate (extracellular)</td>
<td>AHL degradation rate (extracellular)</td>
-
<td>row 5, cell 4</td>
+
<td>   </td>
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<td>&rho;<sub>R</sub></td>
<td>&rho;<sub>R</sub></td>
<td>0.5 &mu;M<sup>-3</sup>min<sup>-1</sup></td>
<td>0.5 &mu;M<sup>-3</sup>min<sup>-1</sup></td>
-
<td>row 6, cell 3</td>
+
<td>LuxR/AHL dimerization</td>
-
<td>row 6, cell 4</td>
+
<td>Basu <i>et al.</i>, 2005</td>
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-
<td>row 7, cell 1</td>
+
<td>K<sub>R</sub></td>
-
<td>row 7, cell 2</td>
+
<td>0.01 &mu;M</td>
-
<td>row 7, cell 3</td>
+
<td>LuxR/AHL activation coefficient</td>
-
<td>row 7, cell 4</td>
+
<td>Basu <i>et al.</i>, 2005</td>
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<tr>
-
<td>row 8, cell 1</td>
+
<td>&eta;</td>
-
<td>row 8, cell 2</td>
+
<td>1</td>
-
<td>row 8, cell 3</td>
+
<td>Hill coefficient</td>
-
<td>row 8, cell 4</td>
+
<td>Basu <i> et al.</i>, 2005</td>
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<tr>
-
<td>row 9, cell 1</td>
+
<td>&alpha; <sub>GFP</sub></td>
-
<td>row 9, cell 2</td>
+
<td> 2 &mu;M min<sup>-1</sup></td>
-
<td>row 9, cell 3</td>
+
<td>GFP synthesis rate</td>
-
<td>row 9, cell 4</td>
+
<td>Basu <i> et al.</i>, 2005</td>
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</tr>
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<tr>
-
<td>row 10, cell 1</td>
+
<td>d<sub>GFP</sub></td>
-
<td>row 10, cell 2</td>
+
<td>0.0692 min<sup>-1</sup </td>
-
<td>row 10,cell 3</td>
+
<td> GFP degradation rate</td>
-
<td>row 10, cell 4</td>
+
<td>Basu <i> et al.</i>, 2005</td>
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Revision as of 15:30, 20 August 2013

Header2.png
80px-Eth igem logo.png

Parameter Value Description Reference
DAHL 4.9 x 10-6 cm2/s AHL diffusion constant Stewart P.S., 2003
Cagar 0.9 Reduced diffusion coefficient Fatin-Rouge et al., 2004
αAHL 0.01 min-1 AHL synthesis rate
dAHL 0.01 min-1 AHL degradation rate (intracellular) Basu et al., 2005
dAHL,e 4.8135 x 10-4min-1 AHL degradation rate (extracellular)
ρR 0.5 μM-3min-1 LuxR/AHL dimerization Basu et al., 2005
KR 0.01 μM LuxR/AHL activation coefficient Basu et al., 2005
η 1 Hill coefficient Basu et al., 2005
α GFP 2 μM min-1 GFP synthesis rate Basu et al., 2005
dGFP 0.0692 min-1 GFP degradation rate Basu et al., 2005
row 11, cell 1 row 11, cell 2 row 11, cell 3 row 11, cell 4
row 13, cell 1 row 13, cell 2 row 13, cell 3 row 13, cell 4
row 14, cell 1 row 14, cell 2 row 14, cell 3 row 14, cell 4
row 15, cell 1 row 15, cell 2 row 15, cell 3 row 15, cell 4
row 16, cell 1 row 16, cell 2 row 16, cell 3 row 16, cell 4
row 17, cell 1 row 17, cell 2 row 17, cell 3 row 17, cell 4
row 18, cell 1 row 18, cell 2 row 18, cell 3 row 18, cell 4
row 19, cell 1 row 19, cell 2 row 19, cell 3 row 19, cell 4
row 20, cell 1 row 20, cell 2 row 20, cell 3 row 20, cell 4
row 21, cell 1 row 21, cell 2 row 21, cell 3 row 21, cell 4
row 22, cell 1 row 22, cell 2 row 22, cell 3 row 22, cell 4
row 23, cell 1 row 23, cell 2 row 23, cell 3 row 23, cell 4
row 24, cell 1 row 24, cell 2 row 24, cell 3 row 24, cell 4
row 25, cell 1 row 25, cell 2 row 25, cell 3 row 25, cell 4
row 26, cell 1 row 26, cell 2 row 26, cell 3 row 26, cell 4
row 27, cell 1 row 27, cell 2 row 27, cell 3 row 27, cell 4
row 28, cell 1 row 28, cell 2 row 28, cell 3 row 28, cell 4
row 29, cell 1 row 29, cell 2 row 29, cell 3 row 29, cell 4
row 29, cell 1 row 29, cell 2 row 29, cell 3 row 29, cell 4
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