Team:ETH Zurich/References
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<b>Quorum sensing</b> | <b>Quorum sensing</b> | ||
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<p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br> | <p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br> | ||
- | <i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites | + | <i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites</i> |
- | [http://www.ncbi.nlm.nih.gov/pubmed/18083819 | + | [http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]</p> |
<html><a id="Basu2005" class="frog"></a></html> | <html><a id="Basu2005" class="frog"></a></html> | ||
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<i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p> | <i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p> | ||
- | <p>J. C. | + | <p>Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907<br> |
- | <i>Development of a Paper-Based Analytical Device for Colorimetric | + | <i>Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens</i> |
[http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]</p> | [http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]</p> | ||
- | <p> Joly N, Danot O, Schlegel A, Boos W, Richet E; J Biol Chem. 2002 May; 277(19):16606-13. <span id="Joly2002"></span><br> | + | <p> Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13. <span id="Joly2002"></span><br> |
<i>The Aes protein directly controls the activity of MalT, the central transcriptional activator of the ''Escherichia coli'' maltose regulon.</i> | <i>The Aes protein directly controls the activity of MalT, the central transcriptional activator of the ''Escherichia coli'' maltose regulon.</i> | ||
[http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]</p> | [http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]</p> | ||
- | <p> Kanaya S, Koyanagi T, Kanaya E; Biochem. J. 1998; 332:75-80. <span id="Kanaya1998"></span><br> | + | <p> Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80. <span id="Kanaya1998"></span><br> |
<i>An esterase from ''Escherichia coli'' with a sequence similarity to hormone-sensitive lipase.</i> | <i>An esterase from ''Escherichia coli'' with a sequence similarity to hormone-sensitive lipase.</i> | ||
[http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed] </p> | [http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed] </p> | ||
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<p>Fatin-Rouge N., Starchev K., Buffle J.; <i>Biophysical Journal</i>. 2004 May; 86:2710–2719.<br> | <p>Fatin-Rouge N., Starchev K., Buffle J.; <i>Biophysical Journal</i>. 2004 May; 86:2710–2719.<br> | ||
- | <i>Size Effects on Diffusion Processes within Agarose Gels</i></p> | + | <i>Size Effects on Diffusion Processes within Agarose Gels</i> |
+ | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p> | ||
+ | |||
+ | <p>Gordon P.V., Muratov C.B., Shvartsman S.Y.;<i> J Chem Phys </i>. 2013 Mar; 138(10):104121</p> | ||
+ | <i>Local accumulation times for source, diffusion, and degradation models in two and three dimensions. </i> | ||
+ | [http://www.ncbi.nlm.nih.gov/pubmed/23514479 PubMed] | ||
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Latest revision as of 01:03, 29 October 2013
References
Quorum sensing
Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; Journal of bacteriology 2008 July; 190(13): 4392–4397.
A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites
PMC
Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation.
Nature
Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; PNAS; 2004 Jul; 101(30): 10955–10960.
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing.
PNAS
Geske G.D., Mattmann M.E., Blackwell H.E.; Bioorganic & Medicinal Chemistry Letters; 2008 Nov; 18(12): 5978–5981.
Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. PubMed
Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. PMC
Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; Nature; 2013 May; 497: 619–623.
Synthetic analog computation in living cells. Nature
Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51
Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. PubMed
Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; Proc Natl Acad Sci. ; 1996 Sept; 93(18): 9505–9509.
Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. PMC
Stewart P.S.; Journal of Bacteriology; 2003 Mar.; 185(5): 1485-1491.
Diffusion in Biofilms.
JB
You L., Cox R.S., Weiss R., Arnold F.H.; Nature 428, 868-871
Programmed population control by cell–cell communication and regulated killing
PubMed
Zhang H.B., Wang L.H., Zhang L.H.;Curr Protoc Microbiol. 2007 Jun;
Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals. Wiley Online library
Hydrolases
Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.PubMed
Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. PubMed
Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene
Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907
Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens
pubs.acs
Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13.
The Aes protein directly controls the activity of MalT, the central transcriptional activator of the Escherichia coli maltose regulon.
PubMed
Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80.
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase.
PubMed
Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. Indigogenic substrates for detection and localization of enzymes. PubMed
Corish P, Tyler-Smith C; Protein Engineering. 199; 12(12): 1053-1040.
Attenuation of green fluorescent protein half-life in mammalian cells.
peds
Fatin-Rouge N., Starchev K., Buffle J.; Biophysical Journal. 2004 May; 86:2710–2719.
Size Effects on Diffusion Processes within Agarose Gels
PMC
Gordon P.V., Muratov C.B., Shvartsman S.Y.; J Chem Phys . 2013 Mar; 138(10):104121
Local accumulation times for source, diffusion, and degradation models in two and three dimensions. PubMed