Team:SJTU-BioX-Shanghai/Project/Regulator/Integrating

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[[File:SgRNA_operons.png|thumb|300px|right|sgRNAs regulated by light sensors.    Up: Red light controlled sgRNA; Medium: Green light controlled sgRNA; Down: Blue light controlled sgRNA]]
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To assure that CRISPRi can be successfully combined with Light Sensors. We constructed sgRNAs targeting mRFP that are regulated by red, green and blue light sensors, respectively.
To assure that CRISPRi can be successfully combined with Light Sensors. We constructed sgRNAs targeting mRFP that are regulated by red, green and blue light sensors, respectively.
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And next, it is show time for our Metabolic Gear Box!
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[[File:Metabolic_Gear_Box_with_Culture.JPG|thumb||700px|A Metabolic Gear Box in work! With bacteria culture! And in a thermostat incubator!]]
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[[File:Metabolic_Gear_Box_Controlling_System.JPG|thumb|700px|A Metabolic Gear Box Receiving Feed-forward Commands.    Researchers will now send commands of desired expression level to the computer. Then these commands will be transferred to the Box]]
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Since it is difficult for RFP reporter to produce qualitative results, we continue to the next phase of our project -- luciferase reporter assay.
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Revision as of 00:00, 28 September 2013

IDEA!

Place sgRNAs under control of different light sensors. One light one sgRNA.

Our system operates like this: 1. light sensors regulates sgRNAs; 2. then sgRNAs regulate their corresponding genes, which is the final targets in the pathway to be optimized.

Therefore, we are able to:

  • Regulate Genomic Genes.

In the past, researchers seldom accomplishes the regulation of genomic genes since it is so difficult to change endogenous promoters to be regulated by outer signals.

  • Simultaneously controlling several genes.

Each gene is regulated by a different light, respectively.

  • Offer a easy-to-use platform.

Users of our Metabolic Gear Box can optimize their own desired pathway after making some minor changes to a vector of sgRNAs.

Testing CRISPRi


To test CRISPRi, we have constructed a constitutive dCas9 on pRSFDuet, a constitutive sgRNA targeting mRFP (gR4mRFP) on pCDFDuet and a constitutive mRFP on pETDuet. Then we set up a strictly controlled experiment as follows:

  • Case: constitutive dCas9 on pRSFDuet + a constitutive gR4mRFP on pCDFDuet + constitutive mRFP on pETDuet
  • Controll: constitutive dCas9 on pRSFDuet + an empty pCDFDuet + constitutive mRFP on pETDuet

CRISPRi test.png
As expected, mRFP repressed by CRISPRi (dCas9 and gR4mRFP) is not as red as the control.

Testing the Interface of CRISPRi and Light Sensors

sgRNAs regulated by light sensors. Up: Red light controlled sgRNA; Medium: Green light controlled sgRNA; Down: Blue light controlled sgRNA


To assure that CRISPRi can be successfully combined with Light Sensors. We constructed sgRNAs targeting mRFP that are regulated by red, green and blue light sensors, respectively.

And next, it is show time for our Metabolic Gear Box!

A Metabolic Gear Box in work! With bacteria culture! And in a thermostat incubator!
A Metabolic Gear Box Receiving Feed-forward Commands. Researchers will now send commands of desired expression level to the computer. Then these commands will be transferred to the Box







Since it is difficult for RFP reporter to produce qualitative results, we continue to the next phase of our project -- luciferase reporter assay.



Gathering Quantitative Data -- sgRNA targeting luciferase


In order to know whether our system provides a wide enough range of continuous adjustment, we constructed sgRNAs targeting luciferase (gR4luciferase) gene. And again, these gR4luciferase are under controll of red, green and blue light, respectively.

Designing a sgRNA targeting luciferase Since we do not know the sequence of a working sgRNA that targets luciferase, so we designed two gR4mRFP ourselves according to those design criteria: one is closer to the start codon, whereas the other is relatively further. However it is necessary for us to test these sgRNA. So we again inserted these two sgRNAs into a constitutive operon. After conducting a luciferase reporter assay with a Beyotime kit, it comes out that the repression effect of these two sgRNAs are 80% and 60%, respectively


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