Team:Heidelberg/Favorite Parts

From 2013.igem.org

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                   <h2><span style="font-size:170%;">BBa_K1152013.</span style="font-size:170%;"> <span style="font-size":50%">IndC Blue Pigment Production Device.</h2>
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                   <h2><span style="font-size:170%;"><a href="http://parts.igem.org/Part:BBa_K1152013">BBa_K1152013</a>.</span style="font-size:170%;"> <span style="font-size":50%">IndC Blue Pigment Production Device.</h2>
<li> The indigoidine synthetase IndC is a <b>single-module NRPS</b>
<li> The indigoidine synthetase IndC is a <b>single-module NRPS</b>
<li> Catalyzes the formation of the <b>blue pigment indigoidine by circularizing glutamine</b>
<li> Catalyzes the formation of the <b>blue pigment indigoidine by circularizing glutamine</b>
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                   <h2><span style="font-size:170%;">BBa_K1152007.</span style="font-size:170%;"> <span style="font-size":50%">The GFP for Non-Ribosomal Peptides.</h2>
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                   <h2><span style="font-size:170%;"><a href="http://parts.igem.org/Part:BBa_K1152007">BBa_K1152007</a>.</span style="font-size:170%;"> <span style="font-size":50%">The GFP for Non-Ribosomal Peptides.</h2>
<li> Enables labeling of <b>custom non-ribosomal peptides</b> with a blue pigment in vivo (see <b><a href="https://2013.igem.org/Team:Heidelberg/Project/Indigoidine-Tag">Indigoidine-Tag</a></b> page)  
<li> Enables labeling of <b>custom non-ribosomal peptides</b> with a blue pigment in vivo (see <b><a href="https://2013.igem.org/Team:Heidelberg/Project/Indigoidine-Tag">Indigoidine-Tag</a></b> page)  
<li> NRPS modules of choice are introduced in front of an <b>engineered IndC module</b> containing an additional C-domain for communication with the previous module
<li> NRPS modules of choice are introduced in front of an <b>engineered IndC module</b> containing an additional C-domain for communication with the previous module
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                   <h2><span style="font-size:170%;">BBa_K1152009.</span style="font-size:170%;"> <span style="font-size":50%">Highly-Efficient NRPS-activating PPTase.</h2>
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                   <h2><span style="font-size:170%;"><a href="http://parts.igem.org/Part:BBa_K1152009">BBa_K1152009</a>.</span style="font-size:170%;"> <span style="font-size":50%">Highly-Efficient NRPS-activating PPTase.</h2>
<li> Helper plasmid for <b>efficient peptide production by engineered or natural NRPSs</b>
<li> Helper plasmid for <b>efficient peptide production by engineered or natural NRPSs</b>
<li> Transfers a 4'-PPT residue from CoA to a conserved serine residue in the T-Domain of NRPS modules, thereby <b>activating the NRPS module</b>
<li> Transfers a 4'-PPT residue from CoA to a conserved serine residue in the T-Domain of NRPS modules, thereby <b>activating the NRPS module</b>
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<li> <b>Improves parts</b> BBa_K802006 and BBa_K302010 which are PPTases that were present in the registry, but neither annotated nor characterized as such
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<li> <b>Improves parts</b> <a href="http://parts.igem.org/Part:BBa_K802006">BBa_K802006</a> and <a href="http://parts.igem.org/Part:BBa_K302010">BBa_K302010</a> which are PPTases that were present in the registry, but neither annotated nor characterized as such
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                   <h2><span style="font-size:170%;">BBa_K1152015 - 2019.</span style="font-size:170%;"> <span style="font-size":50%">A Collection of Synthetic Indigoidine Synthetases Engineered by T-domain Exchange of IndC.</h2>
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                   <h2><span style="font-size:170%;"><a href="http://parts.igem.org/Part:BBa_K1152015">BBa_K1152015 - 2019</a>.</span style="font-size:170%;"> <span style="font-size":50%">A Collection of Synthetic Indigoidine Synthetases Engineered by T-domain Exchange of IndC.</h2>
<li> T-domain is important for <b>NRPS efficiency</b>
<li> T-domain is important for <b>NRPS efficiency</b>
<li> IndC was used as scaffold and the native IndC T-domain was exchanged by <b>different natural and synthetic T-domains</b>
<li> IndC was used as scaffold and the native IndC T-domain was exchanged by <b>different natural and synthetic T-domains</b>
<li> Differing in <b>indigoidine production efficiency</b>
<li> Differing in <b>indigoidine production efficiency</b>
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<li> <b>BBa_K1152015 outperforms the native IndC</b> (BBa_K1152013) when combined with the Sfp or EntD PPTase (red square)
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<li> <b><a href="http://parts.igem.org/Part:BBa_K1152015">BBa_K1152015</a> outperforms the native IndC</b> (<a href="http://parts.igem.org/Part:BBa_K1152013">BBa_K1152013</a>) when combined with the Sfp or EntD PPTase (red square)
<li> Collection can now be applied for tagging synthetic peptides produced by engineered NRPSs (see <b><a href="https://2013.igem.org/Team:Heidelberg/Project/Indigoidine-Tag">Indigoidine-Tag</a></b> subproject)
<li> Collection can now be applied for tagging synthetic peptides produced by engineered NRPSs (see <b><a href="https://2013.igem.org/Team:Heidelberg/Project/Indigoidine-Tag">Indigoidine-Tag</a></b> subproject)

Revision as of 20:33, 28 October 2013

Favorite Parts. Now it is Your turn. Start working with NRPS!


Best BioBrick Part or Device, Natural.

BBa_K1152013. IndC Blue Pigment Production Device.

  • The indigoidine synthetase IndC is a single-module NRPS
  • Catalyzes the formation of the blue pigment indigoidine by circularizing glutamine
  • Indigoidine is visible to the naked eye
  • Indigoidine production can easily be quantified photometrically and is thus an ideal reporter
  • In constrast to many other pigment production devices, IndC does not need any external substrate supply

    • Best BioBrick Part or Device, Engineered.

    BBa_K1152007. The GFP for Non-Ribosomal Peptides.

  • Enables labeling of custom non-ribosomal peptides with a blue pigment in vivo (see Indigoidine-Tag page)
  • NRPS modules of choice are introduced in front of an engineered IndC module containing an additional C-domain for communication with the previous module
  • ccdB is replaced during cloning; close to 100 % cloning efficiency
  • Peptide production can be seen with the naked eye or quantified photometrically
  • Labelled peptides can easily be purified and characterized by thin-layer chromatography
  • Helper-construct for high-throughput cloning of custom NRPSs for production of synthetic peptides (see RFC 100 for details)

    • Most improved Registry Part.

    BBa_K1152009. Highly-Efficient NRPS-activating PPTase.

  • Helper plasmid for efficient peptide production by engineered or natural NRPSs
  • Transfers a 4'-PPT residue from CoA to a conserved serine residue in the T-Domain of NRPS modules, thereby activating the NRPS module
  • Improves parts BBa_K802006 and BBa_K302010 which are PPTases that were present in the registry, but neither annotated nor characterized as such

    • Best Part Collection.

    BBa_K1152015 - 2019. A Collection of Synthetic Indigoidine Synthetases Engineered by T-domain Exchange of IndC.

  • T-domain is important for NRPS efficiency
  • IndC was used as scaffold and the native IndC T-domain was exchanged by different natural and synthetic T-domains
  • Differing in indigoidine production efficiency
  • BBa_K1152015 outperforms the native IndC (BBa_K1152013) when combined with the Sfp or EntD PPTase (red square)
  • Collection can now be applied for tagging synthetic peptides produced by engineered NRPSs (see Indigoidine-Tag subproject)

    • Thanks to

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