Team:NTU-Taida/Parts

From 2013.igem.org

(Difference between revisions)

Latest revision as of 03:10, 28 September 2013

Note

Some plasmids are not submitted due to similar parts in registry or time limit while they are still important fragments in our projects and we still lists them below.

Also, BBa_K575024 and BBa_K575033 submitted from the Northwestern help a lot.

Original Biobrick

Name	Type	Description	Length
BBa_K1157000	Regulatory	promoter sequence for PQS quorum sensing	341
BBa_K1157001	Coding	PQSR	999
BBa_K1157003	Coding	AbaR	597

Reporter

Name	Type	Description	Length
BBa_K1157005	Reporter	Luciferase generator	1094
	Reporter	RBS-mTagBFP-tt	849
	Reporter	RBS-mCherry-tt	858
	Reporter	RBS-GFP-tt	867

Protein Generator

Name	Type	Description	Length
BBa_K1157007	Coding	Quorum sensing receptor pqsR generator	1157
BBa_K1157017	Composite	pPQS-GFPmut3	1227
BBa_K1157019	Composite	Pc-PQSR	1200
	Composite	RBS-RhlR-tt	873
	Composite	RBS-LasR-tt	867
	Composite	RBS-CinR-tt	931
	Composite	RBS-AbaR-tt	741

Without positive feedback circuits

Name	Type	Description	Length
BBa_K1157010	Composite	Pc-RhlR-mCherry	1871
BBa_K1157016	Composite	Pc-LasR-pLas-BFP	1960
BBa_K575033	Composite	PRhl-GFP-Pc-RhlR	1600
BBa_K575024	Composite	Plas-GFP-Pc-LasR	1701
BBa_K1157008	Composite	pLas-BFP-Pc-LasR	2018
	Composite	pPQS-GFP-Pc-PQSR	2401

Positive Feedback circuit

Name	Type	Description	Length
BBa_K1157020	Composite	Pc-RhlR-pRhl-RhlR-GFPmut3	2635
BBa_K1157011	Composite	Pc-RhlR-pRhl-RhlR-BFP	2620
BBa_K1157012	Composite	Pc-RhlR-pRhl-RhlR-luciferase	2851
BBa_K1157018	Composite	pRhl-RhlR-mCherry-Pc-RhlR	2629
BBa_K1157021	Composite	pRhl-RhlR-GFP-Pc-RhlR	2635
BBa_K1157014	Composite	pLas-LasR-GFPmut3-Pc-LasR	2727

Negative Regulation

Name	Type	Description	Length
BBa_K1157013	Composite	pCI-mCherry-pConst-RhlR-pRhl-RhlR-CI	3627
BBa_K1157015	Composite	pConst-Rhl-pRhl-RhlR-CI-pCI-mCherry	3627

@@ Line 1: / Line 1: @@
-<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+{{:Team:NTU-Taida/Templates/Header}}{{:Team:NTU-Taida/Templates/Navbar}}{{:Team:NTU-Taida/Templates/Sidebar|Title=Part}}{{:Team:NTU-Taida/Templates/ContentStart}}
+==Note==
+Some plasmids are not submitted due to similar parts in registry or time limit while they are still important fragments in our projects and we still lists them below.
+Also, BBa_K575024 and BBa_K575033 submitted from the Northwestern help a lot.
+==Original Biobrick==
 <html>
-<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+<table class="tableizer-table">
-<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
-This is a template page. READ THESE INSTRUCTIONS.
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157000"> BBa_K1157000</a></td><td>Regulatory</td><td>promoter sequence for PQS quorum sensing</td><td>341</td></tr>
-</div>
+  <tr><td><a href="http://parts.igem.org/Part:BBa_K1157001">BBa_K1157001</a></td><td>Coding</td><td>PQSR</td><td>999</td></tr>
-<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157003">BBa_K1157003</a></td><td>Coding</td><td>AbaR</td><td>597</td></tr>
-You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
+</table>
-</div>
-<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
-You <strong>MUST</strong>  have all of the pages listed in the menu below with the names specified.   PLEASE keep all of your pages within your teams namespace.
-</div>
-</div>
 </html>
-<!-- *** End of the alert box *** -->
+==Reporter==
+<html>
+<table class="tableizer-table">
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157005">BBa_K1157005</a></td><td>Reporter</td><td>Luciferase generator</td><td>1094</td></tr>
+ <tr><td>&nbsp;</td><td>Reporter</td><td>RBS-mTagBFP-tt</td><td>849</td></tr>
+ <tr><td>&nbsp;</td><td>Reporter</td><td>RBS-mCherry-tt</td><td>858</td></tr>
+ <tr><td>&nbsp;</td><td>Reporter</td><td>RBS-GFP-tt</td><td>867</td></tr>
+</table>
+</html>
-{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+==Protein Generator==
-!align="center"|[[Team:NTU-Taida|Home]]
+<html>
-!align="center"|[[Team:NTU-Taida/Team|Team]]
+<table class="tableizer-table">
-!align="center"|[https://igem.org/Team.cgi?year=2013&team_name=NTU-Taida Official Team Profile]
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
-!align="center"|[[Team:NTU-Taida/Project|Project]]
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157007">BBa_K1157007</a></td><td>Coding</td><td>Quorum sensing receptor pqsR generator</td><td>1157</td></tr>
-!align="center"|[[Team:NTU-Taida/Parts|Parts Submitted to the Registry]]
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157017">BBa_K1157017</a></td><td>Composite</td><td>pPQS-GFPmut3</td><td>1227</td></tr>
-!align="center"|[[Team:NTU-Taida/Modeling|Modeling]]
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157019">BBa_K1157019</a></td><td>Composite</td><td>Pc-PQSR</td><td>1200</td></tr>
-!align="center"|[[Team:NTU-Taida/Notebook|Notebook]]
+ <tr><td>&nbsp;</td><td>Composite</td><td>RBS-RhlR-tt</td><td>873</td></tr>
-!align="center"|[[Team:NTU-Taida/Safety|Safety]]
+ <tr><td>&nbsp;</td><td>Composite</td><td>RBS-LasR-tt</td><td>867</td></tr>
-!align="center"|[[Team:NTU-Taida/Attributions|Attributions]]
+ <tr><td>&nbsp;</td><td>Composite</td><td>RBS-CinR-tt</td><td>931</td></tr>
-|}
+ <tr><td>&nbsp;</td><td>Composite</td><td>RBS-AbaR-tt</td><td>741</td></tr>
+</table>
+</html>
+==Without positive feedback circuits==
+<html>
+<table class="tableizer-table">
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157010">BBa_K1157010</a></td><td>Composite</td><td>Pc-RhlR-mCherry</td><td>1871</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157016">BBa_K1157016</a></td><td>Composite</td><td>Pc-LasR-pLas-BFP</td><td>1960</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_KK575033">BBa_K575033</a></td><td>Composite</td><td>PRhl-GFP-Pc-RhlR</td><td>1600</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K575024">BBa_K575024</a></td><td>Composite</td><td>Plas-GFP-Pc-LasR</td><td>1701</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157008">BBa_K1157008</a></td><td>Composite</td><td>pLas-BFP-Pc-LasR</td><td>2018</td></tr>
+ <tr><td>&nbsp;</td><td>Composite</td><td>pPQS-GFP-Pc-PQSR</td><td>2401</td></tr>
+</table>
+</html>
+==Positive Feedback circuit==
+<html>
+<table class="tableizer-table">
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157020">BBa_K1157020</a></td><td>Composite</td><td>Pc-RhlR-pRhl-RhlR-GFPmut3</td><td>2635</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157011">BBa_K1157011</a></td><td>Composite</td><td>Pc-RhlR-pRhl-RhlR-BFP</td><td>2620</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157012">BBa_K1157012</a></td><td>Composite</td><td>Pc-RhlR-pRhl-RhlR-luciferase</td><td>2851</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157018">BBa_K1157018</a></td><td>Composite</td><td>pRhl-RhlR-mCherry-Pc-RhlR</td><td>2629</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157021">BBa_K1157021</a></td><td>Composite</td><td>pRhl-RhlR-GFP-Pc-RhlR</td><td>2635</td></tr>
+ <tr><td><a href="http://parts.igem.org/Part:BBa_K1157014">BBa_K1157014</a></td><td>Composite</td><td>pLas-LasR-GFPmut3-Pc-LasR</td><td>2727</td></tr>
+</table>
+</html>
-An important aspect of the iGEM competition is the use and creation of standard  biological parts. Each team will make new parts during iGEM and will place them in the [http://partsregistry.org Registry of Standard Biological Parts]. The iGEM software provides an easy way to present the parts your team has created . The "groupparts" tag will generate a table with all of the parts that your team adds to your team sandbox.  Note that if you want to document a part you need to document it on the [http://partsregistry.org Registry], not on your team wiki.
+==Negative Regulation==
+<html>
-Remember that the goal of proper part documentation is to describe and define a part such that it can be used without a need to refer to the primary literature. The next iGEM team should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for  users who wish to know more.
+<table class="tableizer-table">
+<tr class="tableizer-firstrow"><th>Name</th><th>Type</th><th>Description</th><th>Length</th></tr>
+  <tr><td><a href="http://parts.igem.org/Part:BBa_K1157013">BBa_K1157013</a></td><td>Composite</td><td>pCI-mCherry-pConst-RhlR-pRhl-RhlR-CI</td><td>3627</td></tr>
+  <tr><td><a href="http://parts.igem.org/Part:BBa_K1157015">BBa_K1157015</a></td><td>Composite</td><td>pConst-Rhl-pRhl-RhlR-CI-pCI-mCherry</td><td>3627</td></tr>
+</table>
+</html>
-<groupparts>iGEM013 NTU-Taida</groupparts>
+{{:Team:NTU-Taida/Templates/ContentEnd}}{{:Team:NTU-Taida/Templates/Footer|ActiveNavbar=Part}}